If you have changed the amount of air going in and/or the rate that the exhaust exits the machine you will need to compensate with more fuel (more air + more fuel = more horsepower). The way to add more fuel is with the fuel controller. If you have not changed the CDI then you will still hit the rev limiter so adding the intake, exhaust, clutch kit and fuel controller will only get you to the rev limiter quicker. The CDI will bump up the rev limiter so you can get more top speed with a slight change in the timing curve.